Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs12994312 chr2:179034806 T/C 7.93E-10 176 15.82 13.07 2.2 KM Plot
PAAD rs12996084 chr2:179038653 G/T 5.93E-10 178 15.95 13.07 2.2 KM Plot
PAAD rs12997449 chr2:179039572 A/G 5.93E-10 178 15.95 13.07 2.2 KM Plot
PAAD rs13022619 chr2:179040825 C/A 5.93E-10 178 15.95 13.07 2.2 KM Plot
PAAD rs13029674 chr2:38887999 G/A 1.91E-6 175 15.82 14.5 3.43 KM Plot
PAAD rs13030533 chr2:179019387 C/T 4.42E-10 176 15.82 14.33 2.2 KM Plot
PAAD rs13031991 chr2:70499583 A/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs13076319 chr3:170104630 T/G 7.32E-5 176 7.9 15.2 15.77 KM Plot
PAAD rs13077476 chr3:39119615 T/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs13082824 chr3:39046728 C/T 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs13122092 chr4:2402158 C/G 0 178 0.4 16.1 15.37 KM Plot
PAAD rs13122237 chr4:3151997 A/G 0.000135 175 15.82 13.47 4.75 KM Plot
PAAD rs13138720 chr4:2402157 T/C 0 175 0.4 16.1 15.4 KM Plot
PAAD rs1315298 chr11:74600254 A/G 0.000132 177 4.27 15.43 15.57 KM Plot
PAAD rs13163606 chr5:50277812 C/T 5.24E-11 178 15.33 16.48 4.77 KM Plot